I've had both electric and manual PTO (LOTS of both) and overall, I've had less issues with the electric PTOs. They're simple, have few parts, and are easy to trouble shoot. The air gap is either right or wrong, and the coil/wiring either works or doesn't. Replacement of an electric clutch can be a lot more expensive than overhauling a mechanical clutch, although the coils can be rewound if you're patient. There's a ton of parts in the mechanical clutch, they can be finicky to adjust, and they have to be rebuilt from time to time. They are generally much more difficult to remove than the electric clutch. Only the brake style stops immediately when you shut off the attachment...all the earlier ones spin for a long time afterwards. It's nice to be able to ease the mechanical clutches on. On the electric, there is no position between off and on. As long as you're near idle when engaging the electric clutch, there isn't much danger of breaking anything.
All in all...I prefer the electric clutches. They have been more maintenance-free for me. I've only had one coil go bad, and it was my fault it became open.